Landscape Genetics Simulation Modeling Software

CDMetaPOP
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An individual-based, eco-evolutionary model for spatially explicit simulation of landscape demogenetics

Landguth EL, Bearlin A, Day C, Dunham J (2017) CDmetaPOP: an individual-based, eco-evolutionary model for spatially-explicit simulation of landscape demogenetics. Methods in Ecology and Evolution. 8, 4-11, doi: 10.1111/2041-210X.12608

Also see the multispecies version!
Day CC, Landguth EL, Simmons R, Bearlin A (2023) CDMetaPOP 2: a multispecies, eco-evolutionary simulation framework for landscape demogenetics and connectivity. Ecography https://doi.org/10.1111/ecog.06566
CDPOP

Individual-based, spatially explicit simulation model for landscape genetics. 

Landguth EL, Cushman SA (2010) CDPOP: a spatially explicit cost distance population genetics program. Molecular Ecology Resources, 10, 156-161. 

Many extensions of been added, including natural selection:
Landguth EL, Cushman SA, Johnson NA (2012) Simulating natural selection in landscape genetics. Molecular Ecology Resources, 12, 363-368.

Multilocus selction:
Landguth EL, Forester B, Shirk AJ, Menon M, Eckert AJ, Whipple A, Day CC, Cushman SA (2020) Modeling polygenic selection in a landscape genetics framework. Molecular Ecology Resources 20, 605-615. https://doi.org/10.1111/1755-0998.13121.

*Photo by Paul Sunnucks
UNICOR

Landscape and habitat connectivity program in Python. Simulates factorial least cost paths, resistant kernels and other effective distance/path calculations from given resistance or conductance surfaces. 

Landguth EL, Hand BK, Glassy JM, Cushman SA, Sawaya M (2012) UNICOR: a species corridor and connectivity network simulator. Ecography, 12, 9-14.

Data - Surface Fine Particulate Matter